PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676792706
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 394aa    MW: 45171.3 Da    PI: 5.3582
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676792706genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.1e-34161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
     676792706  16 FLTKTYEMVDDSSSDSIVSWSQSNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKNIH 103
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     676792706 104 RRKP 107
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDESNHGGSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNR SFIVWNPPEF SRDLLPRFFK  60
HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSLPNLQAQQ  120
NPLTDLERQR MSSQIERLTK EKQGLLDELH KQEKEREVFE QQVKKLKDQL QHMEKRQKTM  180
ASFVSQVLEK PGLVLNLSPC LPETNERKRR LPRIGFEPML EDSQTCFVAR EEGSTSPSSH  240
ATEHQVEQLE SSIAIWENLV SDSCESMEKS TRSMMTLDVD ESSTCPESPP LSCIQLSIDT  300
RPKSPPSPRI IDMNSEPDVS KEQNTVAPAP APAPAAGVND VFWQQFLTEN PGSTEQKEVQ  360
SEKKDDKAED RSEKYWWNSR NVNTITEQLG HLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231110524129Heat shock factor protein 1
5d5v_B5e-231110524129Heat shock factor protein 1
5d5v_D5e-231110524129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525160.0AK352516.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414044.10.0hypothetical protein EUTSA_v10025409mg
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLE4MVG90.0E4MVG9_EUTHA; mRNA, clone: RTFL01-01-A16
TrEMBLV4MJD70.0V4MJD7_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.7__2405__AT4G18880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A